Experience & Projects

PhD in Bioinformatics

Institut de Biologie de l'École Normale Supérieure (top French institution), Paris, France

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I developed a DNA-sequence data analysis pipeline to study protein-RNA interactions on a large scale.

  • Use bash to pre-process raw sequencing data.
  • Use Python to quantify and manipulate the signal with pandas & numpy.
  • Use statsmodel and scikit-learn to perform statistical testing and data modeling.
  • Use seaborn & matplotlib to visualize data.
  • Use Jupyter notebooks to write reproducible and explanatory code.
  • Research, analyze, and summarize scientific literature to know the state of the art.
  • Design slides and give oral presentations on a regular basis.
  • Structure and write thesis manuscript, scientific reports, and presentations.
  • Collaborate with team members to define week-to-week objectives.

  • programing
  • data processing
  • data visualization
  • project management
  • public speaking
  • scientific & technical writing

Science communicator

Aquarium de la Porte Dorée & Palais de la Découverte (Science museum), Paris, France

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I created and presented 1-hour talks about machine learning, genetics, and fish respiratory systems for the general public.

  • communication
  • public speaking

Skills & Qualifications

Coding & scripting

Python

pandas, NumPy, seaborn, matplotlib, Jupyter, scikit-learn

Web Dev

HTML, CSS, Javascript, SQL

Unix shell

bash, zsh

Machine Learning & Data Analysis

Clustering

k-means, k-nearest neighbors, spectral clustering

Classification

linear regression, random forests, perceptron

Statistics

data distributions, statistical tests (Student, Mann-Whitney, Kolgomorov-Smirnov, ANOVA), confidence intervals, p-value interpretation, data visualization

Dimensionality reduction with PCA

Languages

English

High proficiency (Cambridge certificate C1)

French

Professional proficiency

Spanish

Native

Catalan

Professional proficiency

Education

Master's degree Bioinformatics II

Paris-Saclay University, France

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Multidisciplinary training in biology, computer science and mathematics to meet the needs of R&D.

Master's degree Bioinformatics I

Poitiers University, France

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Training in design and development of software tools applied to R&D projects.

Biochemistry and molecular biology

Rovira i Virgili Universiy, Tarragona, Spain

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Bachelor's degree in the fundamentals of biochemistry, molecular biology, genetics, bioinformatics, statistics, metabolism, and clinical biomarkers.

Contact information:


📍 France (open to remote or relocation)
📞 (+33) 7 82 83 60 60
✉️ contact@tonipaterina.com